PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987816.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HD-ZIP

Protein Properties

Length: 252aa MW: 28397.1 Da PI: 9.7971

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987816.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.5	2e-17	146	197	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +q + Lee F++n ++ ++++eLA kl L+ rqV vWFqNrRa+ k XP_024987816.1 146 IRLSVDQSRLLEESFQQNYRLNPKMKQELAGKLMLKPRQVEVWFQNRRARNK 197 568899********************************************98 PP
2	HD-ZIP_I/II	110	1.7e-35	144	230	2	88
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 kk rls +q++lLEesF+++ +L+p+ K+ela +L l+prqv+vWFqnrRAR k+kq+E +ye+Lkr++++l+e+n++L+ke eeL+ XP_024987816.1 144 KKIRLSVDQSRLLEESFQQNYRLNPKMKQELAGKLMLKPRQVEVWFQNRRARNKLKQTEIKYEYLKRCFESLAEQNKKLHKELEELT 230 89***********************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MEKKIDDGGC VEREDRSSQV GIGDRGDGEE RSVVVICWRP GSTKTKTKGW GEGIEGPWDF 60 RAFEVSKLGL RTLGLSGLEL VRTGDDKREK GNESNVVRRK FDINKVPSEE QWITTTIGGN 120 EEESATTIGI SKATNGGGGG PPMKKIRLSV DQSRLLEESF QQNYRLNPKM KQELAGKLML 180 KPRQVEVWFQ NRRARNKLKQ TEIKYEYLKR CFESLAEQNK KLHKELEELT TTRVGSSTMF 240 SPVVASPSHH PS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	200	RRARNKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	4e-43	HD-ZIP family protein