PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987839.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 248aa MW: 28145.7 Da PI: 5.631

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987839.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.4e-10	138	185	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ +L++l+P + + k + +++L ++Y++sLq XP_024987839.1 138 SHSLAERMRREKINEKLRRLQDLVPGC---Y-KTMGMSMMLDVIINYVRSLQ 185 8*************************9...3.44777899999999999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MRLLDNNMNT ALENFSSFDV NLHGFIPVSA DNFSDHHHPL AYMSLQDGTE AIPSFNFNGD 60 PMNHFPTTTE VFGQLQRDGI ATRVESFMNL NPPIFGPGFI EENKDYGVKK RKKNNEAGVE 120 KAREVVHVRA KRGEATDSHS LAERMRREKI NEKLRRLQDL VPGCYKTMGM SMMLDVIINY 180 VRSLQNQIEF LSMKLSAASM FYDFNSSEME DMETLKGTNG NEAQVMERMA REGYGGGDLP 240 PFQSTWSP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	113	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	4e-54	bHLH family protein