PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987886.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 494aa MW: 53338.2 Da PI: 7.1575

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987886.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19	3.7e-06	86	108	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C k F+r+ nL+ H r+H XP_024987886.1 86 FICDICYKGFPRQQNLQLHGRVH 108 89*****************9998 PP
2	zf-C2H2	13.3	0.00025	162	184	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + s+Lk H++ + XP_024987886.1 162 HECNSCSKKYAVESDLKAHLKIC 184 78******************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MVSGSSSSPL MFLGTVGVDH MNPMTNSRQD SNFVLPTALP PAQLHHHLIA PADQTMIHGP 60 SCKTDPETEV AIAVSPNTLL ADGNRFICDI CYKGFPRQQN LQLHGRVHNL PFKLRARRGV 120 VQRKVYLCPV PTCAHHNRAR ALSDFGGLKK HYLRKHSNEK KHECNSCSKK YAVESDLKAH 180 LKICGKKKYN CSCGAPFSRH SHFAFHQAFC DGQEQEDASK HPPTSDVGNS SVGSTSNNNS 240 SLIGSPTLDL PTLNMGENNN NNSSSNDNSS SVIGSTTPPL DHESLVTPDP SLGLNLIENT 300 AAFFSPSPTP QNQLQGKFGT GFYTNLLMNT NPYNNLDLNS IAFMGEGGIY GSEEAGANSF 360 TGGGIMLDHS SSLHSTSVVY KATLREQLST PQLFLNDDVL GFTSRNNKSN MVQGHISSSS 420 SGVGGFMMPQ EHSAFGSKYL GIANNIGYNT IPNELQNPVN GNDVGSAIFN HDVGGSYMQG 480 GYYGFGDGNN HHDY

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MVSGSSSSPL MFLGTVGVDH MNPMTNSRQD SNFVLPTALP PAQLHHHLIA PADQTMIHGP  60
SCKTDPETEV AIAVSPNTLL ADGNRFICDI CYKGFPRQQN LQLHGRVHNL PFKLRARRGV  120
VQRKVYLCPV PTCAHHNRAR ALSDFGGLKK HYLRKHSNEK KHECNSCSKK YAVESDLKAH  180
LKICGKKKYN CSCGAPFSRH SHFAFHQAFC DGQEQEDASK HPPTSDVGNS SVGSTSNNNS  240
SLIGSPTLDL PTLNMGENNN NNSSSNDNSS SVIGSTTPPL DHESLVTPDP SLGLNLIENT  300
AAFFSPSPTP QNQLQGKFGT GFYTNLLMNT NPYNNLDLNS IAFMGEGGIY GSEEAGANSF  360
TGGGIMLDHS SSLHSTSVVY KATLREQLST PQLFLNDDVL GFTSRNNKSN MVQGHISSSS  420
SGVGGFMMPQ EHSAFGSKYL GIANNIGYNT IPNELQNPVN GNDVGSAIFN HDVGGSYMQG  480
GYYGFGDGNN HHDY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	3e-59	C2H2 family protein