PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987895.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 254aa MW: 28433.9 Da PI: 7.9522

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987895.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.1	4.2e-31	54	150	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCa+C ++r kC+++Cvlap fpae++++f++vhk+FG+snv+ l+k+l++e+ ++a++sl+ eA++r++dPv G +g +++++++l+ ka+ + XP_024987895.1 54 ACASCGHQRTKCTEKCVLAPFFPAEKTQDFQAVHKVFGVSNVTTLVKDLRREDGKKAVDSLIREANCRLKDPVLGPLGEFQRISEELRDYKAQYQ 148 7*****************************************************************************************99987 PP DUF260 96 ll 97 ++ XP_024987895.1 149 QA 150 65 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MADVGGVGRA EEITILHNYL EKYPKRYWEV RVLEAAVSPS PPPTATTSGG GVPACASCGH 60 QRTKCTEKCV LAPFFPAEKT QDFQAVHKVF GVSNVTTLVK DLRREDGKKA VDSLIREANC 120 RLKDPVLGPL GEFQRISEEL RDYKAQYQQA IHHHHHHLRQ VPITQSGVLY NNKSRQQRLI 180 GYWNGGDNNG INNGTMLDYI HSNGIGGGGG IDNSQMFNYA SLQNMEKLKQ EQDQQQGSLI 240 HPQQQIMNEF GQFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	1e-35	LBD family protein