PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987922.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TCP

Protein Properties

Length: 464aa MW: 49892.5 Da PI: 8.1168

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987922.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.7	4.8e-39	89	244	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec 73 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk++eWLl++a ++i+el+++ s+++++++ XP_024987922.1 89 SGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGCDQPSKAVEWLLKAASTSIDELPSLdpsfpgvishnhhhqqqlseekkSTENSTDF 183 689***********************************************************9999988887777776666653322222222 PP TCP 74 eaesssssasnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmrik 133 e+ + ++++sn+++ ++aks a+s+ s++s+ s l+l++ e r kar+rare ++k + k XP_024987922.1 184 EDPNYQQQNSNNNNVSQAKSPACSSTSETSKGSGLSLSRsENRVKARERAREMASKKEKDK 244 4444444444444449999999*************9**********776666555 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MEVDEIQRQV CKFQRVSSNG STTTTDNSSN PQKIATHKGN LELQNHVDDG GGGIDVVVGV 60 GGVGGGGGGG VARLCGWPSS RIVRVSRASG GKDRHSKVLT SKGLRDRRVR LSVSTAIQFY 120 DLQDRLGCDQ PSKAVEWLLK AASTSIDELP SLDPSFPGVI SHNHHHQQQL SEEKKSTENS 180 TDFEDPNYQQ QNSNNNNVSQ AKSPACSSTS ETSKGSGLSL SRSENRVKAR ERAREMASKK 240 EKDKETDSTR VAVLNQVNNI SENSSFTDLL TGGINSTTVR RQNPTASPES RAHWTTPMDY 300 FFSRPPPPSS QLIQMPQFNI TAGDNHHHHN NQQHHFSFLQ DSFVPAVTTA GSSGGGGGES 360 YNLNFSMTSS SGGAALAPGF SRGTLQSNLP SSLLPHHHHI QRFQSSSIDG STPTNLPFFI 420 VPNAASDHFP ATGSYDSQGL HLSYGGGGDG VGRNSDHHKE KAKN

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MEVDEIQRQV CKFQRVSSNG STTTTDNSSN PQKIATHKGN LELQNHVDDG GGGIDVVVGV  60
GGVGGGGGGG VARLCGWPSS RIVRVSRASG GKDRHSKVLT SKGLRDRRVR LSVSTAIQFY  120
DLQDRLGCDQ PSKAVEWLLK AASTSIDELP SLDPSFPGVI SHNHHHQQQL SEEKKSTENS  180
TDFEDPNYQQ QNSNNNNVSQ AKSPACSSTS ETSKGSGLSL SRSENRVKAR ERAREMASKK  240
EKDKETDSTR VAVLNQVNNI SENSSFTDLL TGGINSTTVR RQNPTASPES RAHWTTPMDY  300
FFSRPPPPSS QLIQMPQFNI TAGDNHHHHN NQQHHFSFLQ DSFVPAVTTA GSSGGGGGES  360
YNLNFSMTSS SGGAALAPGF SRGTLQSNLP SSLLPHHHHI QRFQSSSIDG STPTNLPFFI  420
VPNAASDHFP ATGSYDSQGL HLSYGGGGDG VGRNSDHHKE KAKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	9e-63	TCP family protein