PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987923.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family TCP
Protein Properties Length: 429aa    MW: 46118.3 Da    PI: 7.6236
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987923.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1264.1e-39542092133
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec 73 
                      g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk++eWLl++a ++i+el+++                       s+++++++
  XP_024987923.1  54 SGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGCDQPSKAVEWLLKAASTSIDELPSLdpsfpgvishnhhhqqqlseekkSTENSTDF 148
                     689*************************************************************9999988887777776666653322222222 PP

             TCP  74 eaesssssasnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                     e+ + ++++sn+++ ++aks a+s+ s++s+ s l+l++ e r kar+rare  ++k + k
  XP_024987923.1 149 EDPNYQQQNSNNNNVSQAKSPACSSTSETSKGSGLSLSRsENRVKARERAREMASKKEKDK 209
                     4444444444444449999999*****************9************776666555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    
MEVDEIQRQN HVDDGGGGID VVVGVGGVGG GGGGGVARLC GWPSSRIVRV SRASGGKDRH  60
SKVLTSKGLR DRRVRLSVST AIQFYDLQDR LGCDQPSKAV EWLLKAASTS IDELPSLDPS  120
FPGVISHNHH HQQQLSEEKK STENSTDFED PNYQQQNSNN NNVSQAKSPA CSSTSETSKG  180
SGLSLSRSEN RVKARERARE MASKKEKDKE TDSTRVAVLN QVNNISENSS FTDLLTGGIN  240
STTVRRQNPT ASPESRAHWT TPMDYFFSRP PPPSSQLIQM PQFNITAGDN HHHHNNQQHH  300
FSFLQDSFVP AVTTAGSSGG GGGESYNLNF SMTSSSGGAA LAPGFSRGTL QSNLPSSLLP  360
HHHHIQRFQS SSIDGSTPTN LPFFIVPNAA SDHFPATGSY DSQGLHLSYG GGGDGVGRNS  420
DHHKEKAKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.16e-63TCP family protein