PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987926.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 219aa    MW: 24817.9 Da    PI: 9.6037
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987926.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.45.8e-12109153347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E+  ++ + +++G g+W++I+r+   +Rt+ q+ s+ qky
   XP_024987926.1 109 PWTESEHRSFLVGMEKYGRGDWRSISRHSVITRTPTQVASHAQKY 153
                      8*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MQSTWTRYED KLFEKALVDV PVGISGWWQM IADAVPGKTV EEVRAHYEEL MRDLEEIESG  60
RIEFPYYGDD YGRDSFMSWN SELKTSQISF ESGKGSKPGE GPERKKGTPW TESEHRSFLV  120
GMEKYGRGDW RSISRHSVIT RTPTQVASHA QKYFIRQKTI KKQRKRSSIH DITTANAAMQ  180
PTSSTSLVGD KGGIVPPLAP RRPPLAPPPP PPSQSVYQY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.15e-53MYB family protein