PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987960.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LBD
Protein Properties Length: 186aa    MW: 20367.2 Da    PI: 8.1289
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987960.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.39.5e-3721109188
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                     +C aCk+lrrkC+++C++apyf ++q  ++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar+rdPvyG+v+ i +lqqq +
  XP_024987960.1  21 PCGACKFLRRKCVAECIFAPYFVSDQgVSHFAAVHKVFGASNVTKLLLHIPVNKRRDAVITICYEAQARLRDPVYGCVAQIVALQQQSD 109
                     7***********************9977**********************************************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MSTSSSNGGG GGGGGGGGGG PCGACKFLRR KCVAECIFAP YFVSDQGVSH FAAVHKVFGA  60
SNVTKLLLHI PVNKRRDAVI TICYEAQARL RDPVYGCVAQ IVALQQQSDG EVRTLYRAVE  120
SHWFRFLIFL PLMLSSPNGD IMGTLIEDSE KGLFEVGLHY REKEPELKER SRRWEAGKEF  180
ITPNDQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.14e-49LBD family protein