PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987971.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 518aa MW: 57375.4 Da PI: 8.9291

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987971.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	90	110	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H XP_024987971.1 90 CEICNKGFQRDQNLQLHRRGH 110 *******************88 PP
2	zf-C2H2	12.4	0.00047	165	187	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_024987971.1 165 WKCEKCSKRYAVQSDWKAHSKIC 187 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MKGIFLDDNM SNLTSASNEA SLSSSSNRNE IGTMYPPPQM QQSFASVPIS TNNQTQSNKK 60 KRNLPGNPDP EAEVIALSPK SLMATNRFLC EICNKGFQRD QNLQLHRRGH NLPWKLKQKS 120 KLEVVRKKVY VCPEPSCVHH EPSRALGDLT GIKKHFSRKH GEKKWKCEKC SKRYAVQSDW 180 KAHSKICGTR EYRCDCGTLF SRRDSFITHR AFCDALAEET ARSSSSLNHL PLHLPINFPL 240 KTEPQHLLQH PQLSFNIGSS SPHHNHQLPS WLDHHHHQQQ NPSPNGLHLP SPSSHMSATA 300 LLQKAAQMGV TMSNPAPPPS SAVAAAAAIS MSHEQQSIIL SGSHQTLQRD HMCTPLLSSL 360 HHHHNASALG SLSASDNHHG LLEASGGFAN VVSTGCMDHH AHPQVLHPNS LTSTSLGPTN 420 NIHQVFNGML NSTKRDHNSY QEQLFPQAPA SAQTLLNTRK EGAVGNDELT RDFLGLRGFP 480 TPTDHHFLSM AGLDHMANSS PYHQLHPNHN QNQIPWQG

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MKGIFLDDNM SNLTSASNEA SLSSSSNRNE IGTMYPPPQM QQSFASVPIS TNNQTQSNKK  60
KRNLPGNPDP EAEVIALSPK SLMATNRFLC EICNKGFQRD QNLQLHRRGH NLPWKLKQKS  120
KLEVVRKKVY VCPEPSCVHH EPSRALGDLT GIKKHFSRKH GEKKWKCEKC SKRYAVQSDW  180
KAHSKICGTR EYRCDCGTLF SRRDSFITHR AFCDALAEET ARSSSSLNHL PLHLPINFPL  240
KTEPQHLLQH PQLSFNIGSS SPHHNHQLPS WLDHHHHQQQ NPSPNGLHLP SPSSHMSATA  300
LLQKAAQMGV TMSNPAPPPS SAVAAAAAIS MSHEQQSIIL SGSHQTLQRD HMCTPLLSSL  360
HHHHNASALG SLSASDNHHG LLEASGGFAN VVSTGCMDHH AHPQVLHPNS LTSTSLGPTN  420
NIHQVFNGML NSTKRDHNSY QEQLFPQAPA SAQTLLNTRK EGAVGNDELT RDFLGLRGFP  480
TPTDHHFLSM AGLDHMANSS PYHQLHPNHN QNQIPWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	128	KLKQKSKLEVVRKK
2	117	130	KLKQKSKLEVVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-112	C2H2 family protein