PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988000.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

RAV

Protein Properties

Length: 351aa MW: 39175.1 Da PI: 9.6298

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988000.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39	2e-12	58	106	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f ++eAaka++ a ++++g XP_024988000.1 58 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDVAVQRFRG 106 689*9788.8*****3.....5******99**********998 PP
2	B3	98.2	5.2e-31	183	282	1	96
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+ tpsdv+k++rlv+pk++ae+h g++ +++ l +ed++ ++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+ + +++ XP_024988000.1 183 FQKTVTPSDVGKLNRLVIPKQHAEKHfpvqRGSTSKGVLLHFEDSDAKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVNFQSSTGLNKQ 277 99**************************778889*************************************************55445555 PP .EEEE CS B3 92 lvvkv 96 l++ + XP_024988000.1 278 LYIDW 282 56555 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MDRNCTDDQS TTSETTSTLA PPVSTPEMIS LCRVGSGASM VLDPEGGLEA QSRKLPSSRF 60 KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAAKAYDVA VQRFRGRDAV TNFKPLVADT 120 KEASLEASFL SSHSKAEIVD MLRKHTYNDE LEQSKRNCNL DKTSSRDGGC SGSGVVKPRE 180 HLFQKTVTPS DVGKLNRLVI PKQHAEKHFP VQRGSTSKGV LLHFEDSDAK VWRFRYSYWN 240 SSQSYVLTKG WSRFVKEKNL KAGDTVNFQS STGLNKQLYI DWKSKSGSGN TDPQAIQVQP 300 ATKCVEPVQM LRLFGVNIKS VSSCNGNRRS NTEMDLLGFQ SCKKQRIIDV L

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MDRNCTDDQS TTSETTSTLA PPVSTPEMIS LCRVGSGASM VLDPEGGLEA QSRKLPSSRF  60
KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAAKAYDVA VQRFRGRDAV TNFKPLVADT  120
KEASLEASFL SSHSKAEIVD MLRKHTYNDE LEQSKRNCNL DKTSSRDGGC SGSGVVKPRE  180
HLFQKTVTPS DVGKLNRLVI PKQHAEKHFP VQRGSTSKGV LLHFEDSDAK VWRFRYSYWN  240
SSQSYVLTKG WSRFVKEKNL KAGDTVNFQS STGLNKQLYI DWKSKSGSGN TDPQAIQVQP  300
ATKCVEPVQM LRLFGVNIKS VSSCNGNRRS NTEMDLLGFQ SCKKQRIIDV L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-139	RAV family protein