PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988042.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 363aa MW: 42170.9 Da PI: 8.4589

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988042.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.4	6.7e-07	66	87	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg sF+ + +L++H+++H XP_024988042.1 66 VCEECGVSFRKPAHLRQHMQSH 87 6*******************99 PP
2	zf-C2H2	20.1	1.8e-06	93	117	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp dC+ s++rk++L+rH+ H XP_024988042.1 93 FTCPidDCNSSYRRKDHLTRHLLQH 117 89*******************9887 PP
3	zf-C2H2	11.1	0.0013	122	147	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp +C+ Fs + n++rH r H XP_024988042.1 122 FNCPieNCKSKFSIQGNMTRHVREiH 147 78*********************988 PP
4	zf-C2H2	18	8.1e-06	163	187	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C Cgk+F+ s L++H +H XP_024988042.1 163 YACLepGCGKVFKYASKLQKHEESH 187 6777779**************9988 PP
5	zf-C2H2	14.7	8.8e-05	254	278	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C+ +Fs+ snL++H + H XP_024988042.1 254 KCSfnGCNLTFSTISNLRQHVKAaH 278 688999**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MGEETTDTKR EFPIFRDIRR YTCEYCGIVR SKKTIINAHI QSHHQDEIEE KEGDREEDTE 60 GGKLNVCEEC GVSFRKPAHL RQHMQSHLLE RPFTCPIDDC NSSYRRKDHL TRHLLQHDGK 120 LFNCPIENCK SKFSIQGNMT RHVREIHDDL GSTADDMNEQ KQYACLEPGC GKVFKYASKL 180 QKHEESHVRL ETVEAFCAEP GCMKYFANEQ CLKTHLQFCH QHISCEICGS KQLKKNIKRH 240 LRTHDKVVSK ERIKCSFNGC NLTFSTISNL RQHVKAAHFQ QKEFVCSISG CGMRFSFKHV 300 RDKHEKSGRH VYTLGDFVEA DEQFRSRPRG GRKRKLPTAI ESLMRKRVVA PAESIQDISW 360 SVD

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MGEETTDTKR EFPIFRDIRR YTCEYCGIVR SKKTIINAHI QSHHQDEIEE KEGDREEDTE  60
GGKLNVCEEC GVSFRKPAHL RQHMQSHLLE RPFTCPIDDC NSSYRRKDHL TRHLLQHDGK  120
LFNCPIENCK SKFSIQGNMT RHVREIHDDL GSTADDMNEQ KQYACLEPGC GKVFKYASKL  180
QKHEESHVRL ETVEAFCAEP GCMKYFANEQ CLKTHLQFCH QHISCEICGS KQLKKNIKRH  240
LRTHDKVVSK ERIKCSFNGC NLTFSTISNL RQHVKAAHFQ QKEFVCSISG CGMRFSFKHV  300
RDKHEKSGRH VYTLGDFVEA DEQFRSRPRG GRKRKLPTAI ESLMRKRVVA PAESIQDISW  360
SVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	327	335	RPRGGRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-143	C2H2 family protein