PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988066.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 243aa MW: 28079.9 Da PI: 7.2652

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988066.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.6	6.6e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd +l+ +++++G +W+ ++ g+ R++k+c++rw +yl XP_024988066.1 14 KGSWSLEEDHKLISYINRYGIWNWSQMPKFAGLSRSGKSCRLRWTNYL 61 799***************99**********************97 PP
2	Myb_DNA-binding	52.3	1.3e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eEde +++ + lG++ W++Ia++++ gRt++++k++w++ XP_024988066.1 67 RGNFSKEEDETILHSHSILGNR-WSAIASRLP-GRTDNEIKNHWHT 110 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MRNASCEMNK GLKKGSWSLE EDHKLISYIN RYGIWNWSQM PKFAGLSRSG KSCRLRWTNY 60 LKPNVKRGNF SKEEDETILH SHSILGNRWS AIASRLPGRT DNEIKNHWHT RLKKRGTYNL 120 VHETTKPNRT SISSDFEVNN VQNIQQRVNH VNGIIPSQSS WTYEDDGSSS NSSSTFIDQE 180 VDFKADYYDI GSPGNTVDDL HCFWKQLCPI EKLELGNTWG LDSESIFQEP YHDLICXNSE 240 QLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05100.1	8e-52	MYB family protein