PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988089.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 346aa MW: 40063.4 Da PI: 5.0499

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988089.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	150.2	1e-46	10	138	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 pGfrFhPt+eel+++yLkk v+gk++ +++i ++iy ++Pw Lp k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d++++s XP_024988089.1 10 LPGFRFHPTEEELLDFYLKKMVSGKNNLRFDIIGYLNIYLYDPWALPGLSKIGEREWYFFVPRDRKHGSGGRPNRTTQNGFWKATGSDRKIFSLt 104 59**********************88889************8778899**********************************986 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ glkktLvfykgrap+g+ktdWvm+eyrl XP_024988089.1 105 dPKKPLGLKKTLVFYKGRAPRGNKTDWVMNEYRL 138 67788*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MDPTYLELQL PGFRFHPTEE ELLDFYLKKM VSGKNNLRFD IIGYLNIYLY DPWALPGLSK 60 IGEREWYFFV PRDRKHGSGG RPNRTTQNGF WKATGSDRKI FSLTDPKKPL GLKKTLVFYK 120 GRAPRGNKTD WVMNEYRLPD SYPLHKEIVL CKIYRKATSM KVLEQRAAME EVTKTIQPST 180 PLSLEEPISF YTQNDNLASS LPTPMESCHM ASDNSDEFHQ DLLLFWDEKL KDESSPPPAP 240 ITPTESFHVL SDNHDESCHD LMFMLDEKLK EEPDVISDAN SSNTDNDNSI SKVSSLRLPT 300 ENEMLRELQL PKMNTDWTQD SFWTQLCSPW LDNIMLTSPY ANILNF

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MDPTYLELQL PGFRFHPTEE ELLDFYLKKM VSGKNNLRFD IIGYLNIYLY DPWALPGLSK  60
IGEREWYFFV PRDRKHGSGG RPNRTTQNGF WKATGSDRKI FSLTDPKKPL GLKKTLVFYK  120
GRAPRGNKTD WVMNEYRLPD SYPLHKEIVL CKIYRKATSM KVLEQRAAME EVTKTIQPST  180
PLSLEEPISF YTQNDNLASS LPTPMESCHM ASDNSDEFHQ DLLLFWDEKL KDESSPPPAP  240
ITPTESFHVL SDNHDESCHD LMFMLDEKLK EEPDVISDAN SSNTDNDNSI SKVSSLRLPT  300
ENEMLRELQL PKMNTDWTQD SFWTQLCSPW LDNIMLTSPY ANILNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-99	NAC family protein