PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988216.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 445aa    MW: 48680.3 Da    PI: 5.548
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988216.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.13.6e-114794403374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      lLl+cAe+v+ ++l  a++lL ++ el+sp g++ +R+aayf+eAL+ar+ +s  ++y  l  ++ +  +s++  +al+ ++ +sP++kfsh+t
  XP_024988216.1  79 GLLLQCAECVAVDNLDHANNLLPEIAELSSPFGSSPERVAAYFAEALQARIISSYLGTYTPLGIKKLALAQSQKICNALQSYNSISPFIKFSHFT 173
                     58******************************************************************99************************* PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vakrledl 189
                     aNqaI +a++ge+ vHiiD+di+qGlQWp L++ LasRp++  slRiTgvgs    s e le+tg+rL++fA++lg+pfef +l   +  ++++ 
  XP_024988216.1 174 ANQAIFQALQGEDGVHIIDLDIMQGLQWPGLFHILASRPRKIKSLRITGVGS----SIELLEATGRRLNDFANSLGLPFEFVPLegkIG-NITSD 263
                     ****************************************************....9**************************955333.45555 PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                      + +L +++gE+++V++++  h l+d ++s       +L+l+  l+Pk++++veq+++h ++sFl rf+eal+yysalfd+l  +l +e+ er++
  XP_024988216.1 264 LTTQLGIRSGETVVVHWMH--HCLYDVTGSDFA----TLRLLTLLKPKLITIVEQDLSH-AGSFLGRFVEALHYYSALFDALGDGLDSENVERHT 351
                     589**************99..788877777777....**********************.899******************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vE++l+g ei+n+va  g +r+ + + +e+W e l+++GF+pv+l  + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  XP_024988216.1 352 VEQQLFGCEIKNIVAVGGPKRTGEVK-VERWGEELSRVGFRPVSLAGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 440
                     ********************998887.9*************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    
MLHSLLLPST TTTLVNNPNS TTMNANASKR SISDSAGENN EVADDHHHKR RNVEDKGIDN  60
QDDHEIIVEA ESSGLRLLGL LLQCAECVAV DNLDHANNLL PEIAELSSPF GSSPERVAAY  120
FAEALQARII SSYLGTYTPL GIKKLALAQS QKICNALQSY NSISPFIKFS HFTANQAIFQ  180
ALQGEDGVHI IDLDIMQGLQ WPGLFHILAS RPRKIKSLRI TGVGSSIELL EATGRRLNDF  240
ANSLGLPFEF VPLEGKIGNI TSDLTTQLGI RSGETVVVHW MHHCLYDVTG SDFATLRLLT  300
LLKPKLITIV EQDLSHAGSF LGRFVEALHY YSALFDALGD GLDSENVERH TVEQQLFGCE  360
IKNIVAVGGP KRTGEVKVER WGEELSRVGF RPVSLAGNPA AQASLLLGMF PWKGYTLVEE  420
NGCLKLGWKD LSLLTASAWQ PSDAD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-173GRAS family protein