PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988229.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARR-B

Protein Properties

Length: 556aa MW: 62913 Da PI: 6.1157

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988229.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	77.8	1.4e-24	202	255	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt eLH++Fv+av+++ G ek Pk+il+lm+v+ Lt+e+v+SHLQkYRl XP_024988229.1 202 KARVVWTVELHQKFVKAVNHI-GFEKVGPKKILDLMNVPWLTRENVASHLQKYRL 255 68*****************.9*****************************8 PP
2	Myb_DNA-binding	38.8	2.2e-12	204	254	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r WT e+++++v+av+ G + +k+I m+ +t++++ s++qky+ XP_024988229.1 204 RVVWTVELHQKFVKAVNHIGFEkvGPKKILDLMNvPWLTRENVASHLQKYR 254 678***********************************************7 PP
3	Response_reg	81.2	3.3e-27	22	130	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l+++l+k y ev+++ + eal+ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + ++ G XP_024988229.1 22 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAIEALDLLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMRGIQHG 114 89*******************.***********999999******************6644.8****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ ++el++ XP_024988229.1 115 ACDYLLKPIRMKELRN 130 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence
MTEGINGFSS PRADVFPAGL RVLVVDDDPT WLKILEKMLK KCSYEVTTCG LAIEALDLLR 60 ERKDGFDIVI SDVNMPDMDG FKLLEHVGLE MDLPVIMMSV DGETSRVMRG IQHGACDYLL 120 KPIRMKELRN IWQHVYRKKI HEVRDTESHE GLEEMLMMRN VSEQSDDGYM LCGSDMTPGK 180 KRKDAEHKYD DKDFADHSSV KKARVVWTVE LHQKFVKAVN HIGFEKVGPK KILDLMNVPW 240 LTRENVASHL QKYRLYLTRL QKDDLKTSSS GLKHPDFSPR DAAGDRADHI KMQQNEANSY 300 RAPSNLLLQN ANSRIHEVDL KGTASLQTIE PKKVLTGFAA KSHKASSSNI GISHSFGSTQ 360 YSTYNSVLPT QYSWNEGFTE IQFKQERNPQ FQVENGFADL GLPTLQQHNQ VNLQPMQSIA 420 NGLFSKERDK QAKSSSGTKS SFGSYSVPSQ NLTPSFQPPD PSFQPPDPVT SSTWSLKDDH 480 SLEQTSIHNL ELSAFFLQGQ HCSSTNLDMQ NKVPECNDPE FIAEVPSNLY DALRFDYEYP 540 PDSLEYPVID QGLFIV

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence

MTEGINGFSS PRADVFPAGL RVLVVDDDPT WLKILEKMLK KCSYEVTTCG LAIEALDLLR  60
ERKDGFDIVI SDVNMPDMDG FKLLEHVGLE MDLPVIMMSV DGETSRVMRG IQHGACDYLL  120
KPIRMKELRN IWQHVYRKKI HEVRDTESHE GLEEMLMMRN VSEQSDDGYM LCGSDMTPGK  180
KRKDAEHKYD DKDFADHSSV KKARVVWTVE LHQKFVKAVN HIGFEKVGPK KILDLMNVPW  240
LTRENVASHL QKYRLYLTRL QKDDLKTSSS GLKHPDFSPR DAAGDRADHI KMQQNEANSY  300
RAPSNLLLQN ANSRIHEVDL KGTASLQTIE PKKVLTGFAA KSHKASSSNI GISHSFGSTQ  360
YSTYNSVLPT QYSWNEGFTE IQFKQERNPQ FQVENGFADL GLPTLQQHNQ VNLQPMQSIA  420
NGLFSKERDK QAKSSSGTKS SFGSYSVPSQ NLTPSFQPPD PSFQPPDPVT SSTWSLKDDH  480
SLEQTSIHNL ELSAFFLQGQ HCSSTNLDMQ NKVPECNDPE FIAEVPSNLY DALRFDYEYP  540
PDSLEYPVID QGLFIV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67710.1	1e-124	ARR-B family protein