PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988244.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 380aa MW: 41697.2 Da PI: 7.2164

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988244.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	3.9e-32	222	277	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ XP_024988244.1 222 KARRCWSPELHRRFLHALQQLGGAHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 277 68****************************************************97 PP
2	Myb_DNA-binding	42.5	1.5e-13	224	275	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W++e++ ++++a +qlGg t+k I + m g+t ++ks++qky+ XP_024988244.1 224 RRCWSPELHRRFLHALQQLGGAhvaTPKQIRELMKvDGLTNDEVKSHLQKYR 275 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MVFDNNSSDF EEKMQRCREY MEALESERRK IQVFERELPL CLELVTRAIE GCRQQMSGTT 60 NDYFNGQSEC SEQTSSEGPV LEEFIPIKRT SSADEDDQEH QHQHQEPNHK PMNICTKDKS 120 SSSSKKSDWL RSAQLSIQTP DPVELSPKRV PVVEVKRNGC GAFHPFKKEK NPEAAPAAGT 180 AKLSTTPATD PTAAASSTAE TGSGSGGCGG SKSEDKGQSN RKARRCWSPE LHRRFLHALQ 240 QLGGAHVATP KQIRELMKVD GLTNDEVKSH LQKYRLHTRR PSPTIHNNNP QTPQFVVVGG 300 IWMPPPEYTT MAATSTPTSG DTNNSKGVYA PIASHQPSIA EASVSLNKSN SGEKDGGHFH 360 LQESPSTSSS THTTTASPIF

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MVFDNNSSDF EEKMQRCREY MEALESERRK IQVFERELPL CLELVTRAIE GCRQQMSGTT  60
NDYFNGQSEC SEQTSSEGPV LEEFIPIKRT SSADEDDQEH QHQHQEPNHK PMNICTKDKS  120
SSSSKKSDWL RSAQLSIQTP DPVELSPKRV PVVEVKRNGC GAFHPFKKEK NPEAAPAAGT  180
AKLSTTPATD PTAAASSTAE TGSGSGGCGG SKSEDKGQSN RKARRCWSPE LHRRFLHALQ  240
QLGGAHVATP KQIRELMKVD GLTNDEVKSH LQKYRLHTRR PSPTIHNNNP QTPQFVVVGG  300
IWMPPPEYTT MAATSTPTSG DTNNSKGVYA PIASHQPSIA EASVSLNKSN SGEKDGGHFH  360
LQESPSTSSS THTTTASPIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	2e-91	G2-like family protein