PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988286.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NF-YC

Protein Properties

Length: 302aa MW: 33184.9 Da PI: 4.9041

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988286.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58	2.2e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rikki++adedv +i+ +Pvl+ska elf+ +l r++ + +t++ ++ +v++ ++fdfl ++v + XP_024988286.1 6 DTRFPASRIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLKHCVQSYNVFDFLREVVSK 86 5789************************************************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MKKKLDTRFP ASRIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLRRGAK 60 TVNSLHLKHC VQSYNVFDFL REVVSKVPDY GHSDAGLDDR TMIKRKKAAA GEMNESDEEL 120 KRNRMNEARQ TSSNGRGRGR GRPRGRGRGR GSAEREPPQM EVEPESRTSL IQQSSKQGMN 180 LQGETTDNLE SSKSMKGELA VGDGATTGGR DFDLNAGIDE NTEKVSDALD GGASVQPPTP 240 PPPQPVPGTG TGCSSSAEPA ELKQEDYLGL SLSEMDRMAI DTHNLAQINS RLEEEDEDYD 300 EE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	146	RGRGRGRPRGR
2	138	148	RGRGRGRPRGR
3	140	150	RGRGRGRPRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-70	NF-YC family protein