PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988318.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 242aa MW: 27590.9 Da PI: 6.8643

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988318.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.5	1e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed l +++++G ++W++ ++ g+ R++k+c++rw +yl XP_024988318.1 14 KGAWSENEDNMLRAYIEEHGHKNWRKLPKLAGLSRCGKSCRLRWMNYL 61 79********************************************97 PP
2	Myb_DNA-binding	51	3.3e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T eE+e++++ + lG++ W+tIa++++ gR+++++k++w+++l XP_024988318.1 67 RGNYTDEEEEIIINSLNILGNK-WATIAAKLP-GRSDNEIKNYWHTHL 112 899*****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MVRAPYLDKN GVRKGAWSEN EDNMLRAYIE EHGHKNWRKL PKLAGLSRCG KSCRLRWMNY 60 LRPNIKRGNY TDEEEEIIIN SLNILGNKWA TIAAKLPGRS DNEIKNYWHT HLRKRSKQRS 120 TVSHSETEIV QNPKCSKEKG VPQVSEKEYR DEVEILTAVL CSDSSSNANN QQSSSNSLEH 180 MASNGCSSQP PNGDPVGDFW SMEDDFFMAL MDSTNKFVSS SYGHDVILID DVLWPTMDFC 240 GL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	2e-49	MYB family protein