PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988319.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 208aa    MW: 23556.4 Da    PI: 6.3514
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988319.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.6e-163378148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+ T eE+e++++  + lG++ W+tIa++++ gR+++++k++w+++l
   XP_024988319.1 33 RGNYTDEEEEIIINSLNILGNK-WATIAAKLP-GRSDNEIKNYWHTHL 78
                     899*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MAIRIGANFP RLSRCGKSCR LRWMNYLRPN IKRGNYTDEE EEIIINSLNI LGNKWATIAA  60
KLPGRSDNEI KNYWHTHLRK RSKQRSTVSH SETEIVQNPK CSKEKGVPQV SEKEYRDEVE  120
ILTAVLCSDS SSNANNQQSS SNSLEHMASN GCSSQPPNGD PVGDFWSMED DFFMALMDST  180
NKFVSSSYGH DVILIDDVLW PTMDFCGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-30MYB family protein