PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988336.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 555aa    MW: 60330.3 Da    PI: 4.8281
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988336.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.71.4e-1391815531374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++l+la++l+++   la +++ +m+++a+yf+eALa+r++r        l+p++ +++   +    +  f+e++P+lkf+h
  XP_024988336.1 181 LVHTLMACAEAVQQENLALAENLVKQAGMLAVSQAGAMRKVATYFVEALARRIYR--------LSPKPPQDSPAFQD-LLQMHFYETCPYLKFAH 266
                     689****************************************************........55555543333333.33345************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea++g+++vH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+ ++++ l+e+g++La++A++++v+fe++ +va++l+dle
  XP_024988336.1 267 FTANQAILEAFAGKKKVHVIDFSMKQGMQWPALMQALALRPGGPPTFRLTGIGPPSGDNTDHLQEVGWKLAQLADTIHVEFEYRGFVAESLADLE 361
                     ********************************************************99************************************* PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak........... 274
                     + +L+++++E++aVn+v++lh+ll++++++e+    vL++vk+++P++++vveqea+hn+  Flerf+e+l+yys+lfdsle++           
  XP_024988336.1 362 PAMLDLREDEVVAVNSVFELHQLLARPGAVEK----VLSAVKEMKPEILTVVEQEANHNGLVFLERFTESLHYYSTLFDSLESSgnggggvdgga 452
                     ********************************....*********************************************9999********** PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                     ++++s++++ +++++lg++i+nvvaceg +r+erhetl +W++rl++aGF++v+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++r+L+
  XP_024988336.1 453 ISPASNQDKIMSEVYLGKQICNVVACEGPDRVERHETLTQWKSRLDSAGFEAVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHTRSLI 547
                     999******************************************************************************************** PP

            GRAS 369 svSaWr 374
                     ++SaW+
  XP_024988336.1 548 TTSAWK 553
                     *****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    
MKRNHIITSD VTGKAKKTMW DEEDAGVDEL LAVLGYKVKS SDMVDVAQKI EHLEGVLGND  60
DGLSLLASDS VHYNPSDLSS WLESMISELN PTTQPPIIDD SFMNIANTAI AAGNPPPSEV  120
DSTSAFVDDL QAIPGNAIYP PTKKVKSSSS SAGASASSSY NPNPNPNPVV IVDSQENGIR  180
LVHTLMACAE AVQQENLALA ENLVKQAGML AVSQAGAMRK VATYFVEALA RRIYRLSPKP  240
PQDSPAFQDL LQMHFYETCP YLKFAHFTAN QAILEAFAGK KKVHVIDFSM KQGMQWPALM  300
QALALRPGGP PTFRLTGIGP PSGDNTDHLQ EVGWKLAQLA DTIHVEFEYR GFVAESLADL  360
EPAMLDLRED EVVAVNSVFE LHQLLARPGA VEKVLSAVKE MKPEILTVVE QEANHNGLVF  420
LERFTESLHY YSTLFDSLES SGNGGGGVDG GAISPASNQD KIMSEVYLGK QICNVVACEG  480
PDRVERHETL TQWKSRLDSA GFEAVHLGSN AFKQASMLLA LFAGGDGYRV EENNGCLMLG  540
WHTRSLITTS AWKIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein