PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988337.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 537aa    MW: 58497.2 Da    PI: 4.9313
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988337.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.81.3e-1391635351374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++l+la++l+++   la +++ +m+++a+yf+eALa+r++r        l+p++ +++   +    +  f+e++P+lkf+h
  XP_024988337.1 163 LVHTLMACAEAVQQENLALAENLVKQAGMLAVSQAGAMRKVATYFVEALARRIYR--------LSPKPPQDSPAFQD-LLQMHFYETCPYLKFAH 248
                     689****************************************************........55555543333333.33345************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea++g+++vH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+ ++++ l+e+g++La++A++++v+fe++ +va++l+dle
  XP_024988337.1 249 FTANQAILEAFAGKKKVHVIDFSMKQGMQWPALMQALALRPGGPPTFRLTGIGPPSGDNTDHLQEVGWKLAQLADTIHVEFEYRGFVAESLADLE 343
                     ********************************************************99************************************* PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak........... 274
                     + +L+++++E++aVn+v++lh+ll++++++e+    vL++vk+++P++++vveqea+hn+  Flerf+e+l+yys+lfdsle++           
  XP_024988337.1 344 PAMLDLREDEVVAVNSVFELHQLLARPGAVEK----VLSAVKEMKPEILTVVEQEANHNGLVFLERFTESLHYYSTLFDSLESSgnggggvdgga 434
                     ********************************....*********************************************9999********** PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                     ++++s++++ +++++lg++i+nvvaceg +r+erhetl +W++rl++aGF++v+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++r+L+
  XP_024988337.1 435 ISPASNQDKIMSEVYLGKQICNVVACEGPDRVERHETLTQWKSRLDSAGFEAVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHTRSLI 529
                     999******************************************************************************************** PP

            GRAS 369 svSaWr 374
                     ++SaW+
  XP_024988337.1 530 TTSAWK 535
                     *****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    
MKRNHIITSD VTGKAKKTMW DEEDAGVDEL LAVLGYKVKS SDMVDVAQKI EHLEGVLGND  60
DGLSLLASDS VHYNPSDLSS WLESMISELN PTTQPPPPPS EVDSTSAFVD DLQAIPGNAI  120
YPPTKKVKSS SSSAGASASS SYNPNPNPNP VVIVDSQENG IRLVHTLMAC AEAVQQENLA  180
LAENLVKQAG MLAVSQAGAM RKVATYFVEA LARRIYRLSP KPPQDSPAFQ DLLQMHFYET  240
CPYLKFAHFT ANQAILEAFA GKKKVHVIDF SMKQGMQWPA LMQALALRPG GPPTFRLTGI  300
GPPSGDNTDH LQEVGWKLAQ LADTIHVEFE YRGFVAESLA DLEPAMLDLR EDEVVAVNSV  360
FELHQLLARP GAVEKVLSAV KEMKPEILTV VEQEANHNGL VFLERFTESL HYYSTLFDSL  420
ESSGNGGGGV DGGAISPASN QDKIMSEVYL GKQICNVVAC EGPDRVERHE TLTQWKSRLD  480
SAGFEAVHLG SNAFKQASML LALFAGGDGY RVEENNGCLM LGWHTRSLIT TSAWKIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein