PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988339.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 529aa    MW: 57758.5 Da    PI: 4.9893
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988339.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.91.2e-1391555271374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++l+la++l+++   la +++ +m+++a+yf+eALa+r++r        l+p++ +++   +    +  f+e++P+lkf+h
  XP_024988339.1 155 LVHTLMACAEAVQQENLALAENLVKQAGMLAVSQAGAMRKVATYFVEALARRIYR--------LSPKPPQDSPAFQD-LLQMHFYETCPYLKFAH 240
                     689****************************************************........55555543333333.33345************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea++g+++vH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+ ++++ l+e+g++La++A++++v+fe++ +va++l+dle
  XP_024988339.1 241 FTANQAILEAFAGKKKVHVIDFSMKQGMQWPALMQALALRPGGPPTFRLTGIGPPSGDNTDHLQEVGWKLAQLADTIHVEFEYRGFVAESLADLE 335
                     ********************************************************99************************************* PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak........... 274
                     + +L+++++E++aVn+v++lh+ll++++++e+    vL++vk+++P++++vveqea+hn+  Flerf+e+l+yys+lfdsle++           
  XP_024988339.1 336 PAMLDLREDEVVAVNSVFELHQLLARPGAVEK----VLSAVKEMKPEILTVVEQEANHNGLVFLERFTESLHYYSTLFDSLESSgnggggvdgga 426
                     ********************************....*********************************************9999********** PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                     ++++s++++ +++++lg++i+nvvaceg +r+erhetl +W++rl++aGF++v+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++r+L+
  XP_024988339.1 427 ISPASNQDKIMSEVYLGKQICNVVACEGPDRVERHETLTQWKSRLDSAGFEAVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHTRSLI 521
                     999******************************************************************************************** PP

            GRAS 369 svSaWr 374
                     ++SaW+
  XP_024988339.1 522 TTSAWK 527
                     *****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    
MKRNHIITSD VTGKAKKTMW DEEDAGVDEL LAVLGYKVKS SDMVDVAQKI EHLEGVLGND  60
DGLSLLASDS VHYNPSDLSS WLESMISELN PTTQPPIIDD SFDLQAIPGN AIYPPTKKVK  120
SSSSSAGASA SSSYNPNPNP NPVVIVDSQE NGIRLVHTLM ACAEAVQQEN LALAENLVKQ  180
AGMLAVSQAG AMRKVATYFV EALARRIYRL SPKPPQDSPA FQDLLQMHFY ETCPYLKFAH  240
FTANQAILEA FAGKKKVHVI DFSMKQGMQW PALMQALALR PGGPPTFRLT GIGPPSGDNT  300
DHLQEVGWKL AQLADTIHVE FEYRGFVAES LADLEPAMLD LREDEVVAVN SVFELHQLLA  360
RPGAVEKVLS AVKEMKPEIL TVVEQEANHN GLVFLERFTE SLHYYSTLFD SLESSGNGGG  420
GVDGGAISPA SNQDKIMSEV YLGKQICNVV ACEGPDRVER HETLTQWKSR LDSAGFEAVH  480
LGSNAFKQAS MLLALFAGGD GYRVEENNGC LMLGWHTRSL ITTSAWKIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein