PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988342.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 517aa    MW: 56467.9 Da    PI: 4.8576
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988342.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4571.1e-1391435151374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++l+la++l+++   la +++ +m+++a+yf+eALa+r++r        l+p++ +++   +    +  f+e++P+lkf+h
  XP_024988342.1 143 LVHTLMACAEAVQQENLALAENLVKQAGMLAVSQAGAMRKVATYFVEALARRIYR--------LSPKPPQDSPAFQD-LLQMHFYETCPYLKFAH 228
                     689****************************************************........55555543333333.33345************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea++g+++vH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+ ++++ l+e+g++La++A++++v+fe++ +va++l+dle
  XP_024988342.1 229 FTANQAILEAFAGKKKVHVIDFSMKQGMQWPALMQALALRPGGPPTFRLTGIGPPSGDNTDHLQEVGWKLAQLADTIHVEFEYRGFVAESLADLE 323
                     ********************************************************99************************************* PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak........... 274
                     + +L+++++E++aVn+v++lh+ll++++++e+    vL++vk+++P++++vveqea+hn+  Flerf+e+l+yys+lfdsle++           
  XP_024988342.1 324 PAMLDLREDEVVAVNSVFELHQLLARPGAVEK----VLSAVKEMKPEILTVVEQEANHNGLVFLERFTESLHYYSTLFDSLESSgnggggvdgga 414
                     ********************************....*********************************************9999********** PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                     ++++s++++ +++++lg++i+nvvaceg +r+erhetl +W++rl++aGF++v+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++r+L+
  XP_024988342.1 415 ISPASNQDKIMSEVYLGKQICNVVACEGPDRVERHETLTQWKSRLDSAGFEAVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHTRSLI 509
                     999******************************************************************************************** PP

            GRAS 369 svSaWr 374
                     ++SaW+
  XP_024988342.1 510 TTSAWK 515
                     *****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    
MKRNHIITSD VTGKAKKTMW DEEDAGVDEL LAVLGYKVKS SDMVDVAQKI EHLEGVLGND  60
DGLSLLASDS VHYNPSDLSS WLESMISELN PTTQPPIIDD SFMNIANTSS SSSAGASASS  120
SYNPNPNPNP VVIVDSQENG IRLVHTLMAC AEAVQQENLA LAENLVKQAG MLAVSQAGAM  180
RKVATYFVEA LARRIYRLSP KPPQDSPAFQ DLLQMHFYET CPYLKFAHFT ANQAILEAFA  240
GKKKVHVIDF SMKQGMQWPA LMQALALRPG GPPTFRLTGI GPPSGDNTDH LQEVGWKLAQ  300
LADTIHVEFE YRGFVAESLA DLEPAMLDLR EDEVVAVNSV FELHQLLARP GAVEKVLSAV  360
KEMKPEILTV VEQEANHNGL VFLERFTESL HYYSTLFDSL ESSGNGGGGV DGGAISPASN  420
QDKIMSEVYL GKQICNVVAC EGPDRVERHE TLTQWKSRLD SAGFEAVHLG SNAFKQASML  480
LALFAGGDGY RVEENNGCLM LGWHTRSLIT TSAWKIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein