PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988375.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 731aa    MW: 80611.2 Da    PI: 6.2599
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988375.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.6e-1963118156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+ +++p+ ++r+eL ++l+L+  qVk+WFqN+R++ k
  XP_024988375.1  63 KKRYHRHTQHQIQEMEAFFKDCPHPDDKQRKELGRRLSLEPLQVKFWFQNKRTQVK 118
                     688999**********************************************9877 PP
2START213.57.5e-672514721206
                     HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     ela +a++el+++a+++ep+Wv  s     e + +de+ + f+++ +      ++ea+r+s vv+m++++lve+l+d++ qW++ +     +a+t
  XP_024988375.1 251 ELAVAAMEELIRMAQVGEPLWVPISnnssqETLSEDEYQRAFPRGIGpkpmgLKTEASRESMVVIMNHMTLVEILMDVN-QWSNVFCaivsRATT 344
                     57899*****************9998988888999999999999998********************************.*****999999**** PP

                     EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                     lev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+ +g+wv+vdvS+ds ++ +    + R++++pSg+li++++ng+skvtwveh
  XP_024988375.1 345 LEVLSTGvagnynGALQVMTAEYQVPSPLVPtRENYFVRYCKQHADGTWVVVDVSLDSLRSSS----ISRCRRRPSGCLIQELPNGYSKVTWVEH 435
                     ***********************************************************9865....8*************************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     v+++   +h ++++lv+sgla+gak+wvatl+rqce+
  XP_024988375.1 436 VEVDTGAVHDIYKVLVNSGLAFGAKRWVATLDRQCER 472
                     ***********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    
MFQPSMFESH HHHHLLDQMS HKTPENSLDM LRDHDDHDSR SGTDIIEPPS GDDQDPNQRP  60
NKKKRYHRHT QHQIQEMEAF FKDCPHPDDK QRKELGRRLS LEPLQVKFWF QNKRTQVKAQ  120
HERYDNTNLR NENDKLQAEN MRYKEALANT TCPNCGGPAS IGEMSFDEQQ LRIENARLRE  180
EIDRLSGIAA KFVGKSSLIY PDLSPHGPSR SLDLPTNFSP QHGMVGEMFG TSDLLRSMAG  240
PTEAEKPIII ELAVAAMEEL IRMAQVGEPL WVPISNNSSQ ETLSEDEYQR AFPRGIGPKP  300
MGLKTEASRE SMVVIMNHMT LVEILMDVNQ WSNVFCAIVS RATTLEVLST GVAGNYNGAL  360
QVMTAEYQVP SPLVPTRENY FVRYCKQHAD GTWVVVDVSL DSLRSSSISR CRRRPSGCLI  420
QELPNGYSKV TWVEHVEVDT GAVHDIYKVL VNSGLAFGAK RWVATLDRQC ERLASAMASN  480
IPAGDVGVIS NPEGRKSMLK LAERMVLGFC TGVGASTAHT WTTLSGSGAD DVRVMTRKTT  540
DDAGRPAGIV LCAATSFWLP VPPKQVFNFL RDENSRIEWD ILSNCGLVQK IVHIANGRDP  600
GNYVSLLRIN SANSSQSHML ILQESSCDST GAYVIYAPVD IASMNVALSG ADPDCFALLP  660
SGFAILPDGP GQYEGGDLDV GTGGSLLTIA FQILVDSVPT SKLSLGSVAT VNTLIKCTAE  720
RIKAAAASHN L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein