PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988376.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 509aa MW: 55050.1 Da PI: 8.3799

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988376.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.5	7.6e-30	270	328	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+ +d++++++tYeg+H h+ XP_024988376.1 270 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCVDDQTILITTYEGTHSHP 328 7*********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MGKAGWGLTL DTSEPVELLS PRWNIPTYSG VTTASSPPTM VAEDKNSHRK VVSEVDFFSA 60 CKSNDDQIFV KKENSSDHQI TELDVNTGLH LLTTNSDQSS VDDGVSSTGE DQRAKNKLTI 120 LQVELEKMNT ENQRLRGMLS QVSNNYTALQ MHIANEIQKQ QHSRKQTILQ DQKVDHQGSV 180 SRQPGPTSRD SSSEERTQSG STLNALELTK NGDTIGAKRI ARENTPDSDG WVSNKLPKLN 240 PSKNTEQANE STMRKARVSV RARSEAPMIT DGCQWRKYGQ KMAKGNPCPR AYYRCTMAVG 300 CPVRKQVQRC VDDQTILITT YEGTHSHPLP PAALAMASTT SAAASMLLSG SMSSADGLMN 360 PNLLARSILP NPSSIATISA SAPFPTVTLD LTHNPNQFQR NPNSTQFQSH ISSQNLPPNS 420 GDPNLYNQSR FSGLQLSHQT TQLQINRGQH HASFADSLGA ATAAITADPN FTAALAAAIS 480 SIMSGSTTTS TTATTTANNN HKASNLQGN

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MGKAGWGLTL DTSEPVELLS PRWNIPTYSG VTTASSPPTM VAEDKNSHRK VVSEVDFFSA  60
CKSNDDQIFV KKENSSDHQI TELDVNTGLH LLTTNSDQSS VDDGVSSTGE DQRAKNKLTI  120
LQVELEKMNT ENQRLRGMLS QVSNNYTALQ MHIANEIQKQ QHSRKQTILQ DQKVDHQGSV  180
SRQPGPTSRD SSSEERTQSG STLNALELTK NGDTIGAKRI ARENTPDSDG WVSNKLPKLN  240
PSKNTEQANE STMRKARVSV RARSEAPMIT DGCQWRKYGQ KMAKGNPCPR AYYRCTMAVG  300
CPVRKQVQRC VDDQTILITT YEGTHSHPLP PAALAMASTT SAAASMLLSG SMSSADGLMN  360
PNLLARSILP NPSSIATISA SAPFPTVTLD LTHNPNQFQR NPNSTQFQSH ISSQNLPPNS  420
GDPNLYNQSR FSGLQLSHQT TQLQINRGQH HASFADSLGA ATAAITADPN FTAALAAAIS  480
SIMSGSTTTS TTATTTANNN HKASNLQGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-100	WRKY family protein