PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988391.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 303aa MW: 33215.7 Da PI: 7.6892

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988391.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.4	6e-33	155	212	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+ XP_024988391.1 155 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHH 212 8******************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
MDDKDKVDPV AGGFTSDNTW TFQGDYSFFG NDARESSVLN EFGWNFQPPP SVFDRIDSDV 60 VGSSVSLPEV SVGVIASEVQ AGSIDEAGDV SISNPLVSTS SSEDRMESST ASGDAAFGGK 120 PPSSERAGKA KKKGPKRIRQ PRFAFMTKSE IDHLEDGYRW RKYGQKAVKN SPFPRSYYRC 180 TNSKCTVKKR VERSSEDPTI VITTYEGQHC HHTVGFPRGL INHHEAVYAR QLPPSSALQP 240 ANYSRAQFPS EMHAVVTSQS RPQLVSSESG DHMSHRLPQS SSQGSQVGQG LLGDIVPPRM 300 RNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	1e-55	WRKY family protein