PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988439.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 285aa    MW: 32883.2 Da    PI: 5.1116
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988439.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l  +++++G  +W+ I+r  g  R++k+c++rw +yl
   XP_024988439.1 14 KGPWSKEEDDKLRAYIERYGHWNWREIPRFAGVSRCGKSCRLRWMNYL 61
                     79******************99************************97 PP
2Myb_DNA-binding58.51.5e-1868112248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g++T+eE++l+++++++lG++ W+tIa++++ gR+++++k++w+++l
   XP_024988439.1  68 GNFTKEEEDLIIELHNELGNK-WSTIAAKLP-GRSDNEIKNYWNSHL 112
                      89*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MSRTPYFDKN GKRKGPWSKE EDDKLRAYIE RYGHWNWREI PRFAGVSRCG KSCRLRWMNY  60
LRPNLKHGNF TKEEEDLIIE LHNELGNKWS TIAAKLPGRS DNEIKNYWNS HLRKRSKQDQ  120
NVLKNVHDDT PRESNQTKPT KNSMEDPQLG EMDELEALWA SLSSETSFAD THEYPYVTQS  180
SESRSISSYS SSAELTSSMF SISECLVSSG DSAVETYGGE YDGNFWTDPI FPDYNSTRST  240
EYSSDLDVAN GLVAPAACHD YMAIGDEFLW STMDLYSQYH SQFMK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.27e-56MYB family protein