PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988448.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 257aa MW: 27932.1 Da PI: 7.8435

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988448.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.8	2.9e-09	10	55	3	45
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45 WT e d+ + +a ++ + +W++Ia+ + g++ +++k+++ XP_024988448.1 10 VWTREQDKAFENALVTYPDEkskdRWEKIAAVVR-GKSVEEIKHHYE 55 6***************99**********.********96 PP
2	Myb_DNA-binding	43.4	7.8e-14	122	166	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r +Rt+ q+ s+ qky XP_024988448.1 122 AWTEDEHRLFLLGLEKYGKGDWRSISRNYVVTRTPTQVASHAQKY 166 6*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MADETVGDSV WTREQDKAFE NALVTYPDEK SKDRWEKIAA VVRGKSVEEI KHHYELLVED 60 LDNIESGLVP LPCYSSSLDD SESHAGDGGT SKKGGNFGQN SSESNHGGKA SKSDQERRKG 120 IAWTEDEHRL FLLGLEKYGK GDWRSISRNY VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS 180 SIHDITSVNN GDVSLPQPPT GVGMTIGQPV GGGPLVSAVG TPVGLAAAPA AHMAYGVGTQ 240 GISSHVKKQV TKLYKQP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-100	MYB family protein