PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988486.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 426aa MW: 46954.1 Da PI: 6.6596

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988486.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	85.6	5.2e-27	149	203	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ile+m++ +Lt+++++SHLQkYR++ XP_024988486.1 149 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILEIMGIGCLTRHNIASHLQKYRSH 203 5689***************.******************************86 PP
2	Myb_DNA-binding	38.2	3.4e-12	152	201	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e++ ++v+av+qlG + +++I + mg +t+ ++ s++qky+ XP_024988486.1 152 VDWTPELHRRFVQAVEQLGVDkaVPSRILEIMGiGCLTRHNIASHLQKYR 201 57******************************889**********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MLAVVSPLEN NTTRDGRDQG AEMVGFSVGD DFPDFSDDNL LESIDFDDLF EGMDDRDMLP 60 DLEMDPELLA GEFSLSGGEA DSSEFNNNSV TSFSGEQKLE DLISRKEEEV SKRDERNEAV 120 ATNPARKESD RGRKSSSDKS KNSSQGKRKV KVDWTPELHR RFVQAVEQLG VDKAVPSRIL 180 EIMGIGCLTR HNIASHLQKY RSHRKHLLAR EAEAASWSQR RQMYGGNTTI GGGGGGSGGG 240 GGKRDMGPWV APPTMGFPPM TPLPHYRPLH VWGHPSMDRP LMPVWPKHIT SLPPTPPPPH 300 VWPPSPSPPP PTWHPHHQHQ RAPYFPQVLP QTRFPTPHVP VPGIPPPHAM YKIDSCVGVP 360 TPPIGQSCPQ PPRDLHPSKE SIDAAIGDIL SKPWQPLPLG LKPPALDSVM VELQRQGIQK 420 IPPTCV

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MLAVVSPLEN NTTRDGRDQG AEMVGFSVGD DFPDFSDDNL LESIDFDDLF EGMDDRDMLP  60
DLEMDPELLA GEFSLSGGEA DSSEFNNNSV TSFSGEQKLE DLISRKEEEV SKRDERNEAV  120
ATNPARKESD RGRKSSSDKS KNSSQGKRKV KVDWTPELHR RFVQAVEQLG VDKAVPSRIL  180
EIMGIGCLTR HNIASHLQKY RSHRKHLLAR EAEAASWSQR RQMYGGNTTI GGGGGGSGGG  240
GGKRDMGPWV APPTMGFPPM TPLPHYRPLH VWGHPSMDRP LMPVWPKHIT SLPPTPPPPH  300
VWPPSPSPPP PTWHPHHQHQ RAPYFPQVLP QTRFPTPHVP VPGIPPPHAM YKIDSCVGVP  360
TPPIGQSCPQ PPRDLHPSKE SIDAAIGDIL SKPWQPLPLG LKPPALDSVM VELQRQGIQK  420
IPPTCV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	2e-82	G2-like family protein