PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988502.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 250aa    MW: 28130.1 Da    PI: 9.7947
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988502.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-1180127355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++h+ +ErrRR+riN  +++ r l+P        K++Ka+ L ++++++k+L+
  XP_024988502.1  80 KSHSDAERRRRERINAHLHTFRGLVPCT-----DKMDKATLLAEVIRHVKQLK 127
                     58*************************7.....6*****************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MDFYTWNQKF SNLGSNRNDR SLGNSDGFSR DCGNADGVFT KSSQSLVLNE QKGELVKADG  60
KVIGKKIGLK SDEKAMAALK SHSDAERRRR ERINAHLHTF RGLVPCTDKM DKATLLAEVI  120
RHVKQLKTDA KEASIGLLIP EDVDELIIEK VNGGLTFRAS ICCKRRPELL TDLRRALDAL  180
KVNIERAELS ALGDHMKIVF YFTRTTTATT DEDLVSFVRE ALNSVIEKAP FSPEYSPRTT  240
LPNKRRRYSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691ERRRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.15e-25bHLH family protein