PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988508.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family SBP
Protein Properties Length: 141aa    MW: 16008.8 Da    PI: 8.4955
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988508.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.75.9e-4257133177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +CqvegC++d++++k+yhrrhkvCevh+ka+ v++ g +qrfCqqCsrfh+l+efD++krsCrrrLa+hnerrrk++
  XP_024988508.1  57 CCQVEGCTTDMTNCKTYHRRHKVCEVHAKASIVITGGCQQRFCQQCSRFHDLTEFDDAKRSCRRRLAGHNERRRKSS 133
                     6**************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    
METTKSGRVV RSMNDKLKNE MMEDGEEDDD ENFGEGSRKK KVLGKRGSGS GGSIQPCCQV  60
EGCTTDMTNC KTYHRRHKVC EVHAKASIVI TGGCQQRFCQ QCSRFHDLTE FDDAKRSCRR  120
RLAGHNERRR KSSYETYGES S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.12e-34SBP family protein