PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988528.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Protein Properties

Length: 379aa MW: 42292.9 Da PI: 4.5716

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988528.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.7	1.2e-14	11	98	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ffk+l d ++s+ l lp f+++h+++k+ tl++ + g sW++++ ++ +++y ++ GWk+ v++ +L gDf+vFkl+++s+f v+vf XP_024988528.1 11 FFKIL--LDPSASH-LPLPHAFVSKHKIPKNP--TLQIA-TGGYSWRLTI--ERIGKAYCFGHGWKNVVEDAQLGFGDFLVFKLVHQSTF--IVSVF 97 78888..6667777.99*******877533..67744.599***..*******************************98888..99888 PP - CS B3 98 r 98 XP_024988528.1 98 A 98 5 PP
2	B3	49.6	6.9e-16	204	292	8	96
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + + +++l+lp +f+e g+ ++s t+tl++++ +W++ ++ +k ++ y l+ GW++F ++n+L egD +vFk+++++++ +vk+ XP_024988528.1 204 ISKTHNNLLRLPSEFVELAGIG-NQS-TITLKNLDEHEWRLGIRSEKIARTarYHLSPGWQDFRRSNELSEGDECVFKYIKSEGKLSLVKI 292 56678899******655544.344.9***********8855444456*************************97666556666 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MADCSPPPPS FFKILLDPSA SHLPLPHAFV SKHKIPKNPT LQIATGGYSW RLTIERIGKA 60 YCFGHGWKNV VEDAQLGFGD FLVFKLVHQS TFIVSVFAPN GCERFLPSSK IKVEDDVDVD 120 VDVVDDDDDS NDGIVYEGGG DEDDDEEEEE EDNDDDDSEE EEEEEDDDDD SGSGGDGDGG 180 DDDDDDGDGG IDGDDGDPFF MTIISKTHNN LLRLPSEFVE LAGIGNQSTI TLKNLDEHEW 240 RLGIRSEKIA RTARYHLSPG WQDFRRSNEL SEGDECVFKY IKSEGKLSLV KITKKKPMAR 300 QSPVKIPATE VVKRKRGRPV VKVNAVARQP PAKTPAKKVV KRKRGRPFKN RRPVDVQSGD 360 DCVEVVQRRP SKKSRVIYF

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MADCSPPPPS FFKILLDPSA SHLPLPHAFV SKHKIPKNPT LQIATGGYSW RLTIERIGKA  60
YCFGHGWKNV VEDAQLGFGD FLVFKLVHQS TFIVSVFAPN GCERFLPSSK IKVEDDVDVD  120
VDVVDDDDDS NDGIVYEGGG DEDDDEEEEE EDNDDDDSEE EEEEEDDDDD SGSGGDGDGG  180
DDDDDDGDGG IDGDDGDPFF MTIISKTHNN LLRLPSEFVE LAGIGNQSTI TLKNLDEHEW  240
RLGIRSEKIA RTARYHLSPG WQDFRRSNEL SEGDECVFKY IKSEGKLSLV KITKKKPMAR  300
QSPVKIPATE VVKRKRGRPV VKVNAVARQP PAKTPAKKVV KRKRGRPFKN RRPVDVQSGD  360
DCVEVVQRRP SKKSRVIYF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	294	316	KKKPMARQSPVKIPATEVVKRKR
2	313	343	KRKRGRPVVKVNAVARQPPAKTPAKKVVKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53310.1	8e-11	B3 family protein