PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988539.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 166aa    MW: 18289.5 Da    PI: 8.4825
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988539.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-1956107256
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+++AeIrd    + + +r++lg+f tae+Aa a+++a+ +++g+
  XP_024988539.1  56 HYRGVRRRP-WGKYAAEIRDS---NrHGARVWLGTFETAEDAALAYDRAAFEMRGA 107
                     8********.**********4...3234**************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    
MEPTCSGHEL PLNENDSQDM VLYQVLNEAS TIVGFGATAV SRTALQPTRV ISKSKHYRGV  60
RRRPWGKYAA EIRDSNRHGA RVWLGTFETA EDAALAYDRA AFEMRGAKAL LNFPAELMAS  120
MQKTSQESNF NRNDWQGSCS SSSSREISNS KGAPGPSCEG KMLQLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.11e-31ERF family protein