PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988654.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 378aa MW: 43801.8 Da PI: 6.5755

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988654.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	79	101	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H XP_024988654.1 79 CSyeGCGKTFIDAGALRKHAHIH 101 77779**************9877 PP
2	zf-C2H2	15.9	3.7e-05	106	130	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ +Cgk F ++s LkrH H XP_024988654.1 106 YVCHyeNCGKKFLDSSKLKRHFLIH 130 9********************8877 PP
3	zf-C2H2	21.7	5.4e-07	136	160	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nL++H++tH XP_024988654.1 136 FVCPheGCGKAFSLDFNLRSHMKTH 160 89**********************9 PP
4	zf-C2H2	15.8	4e-05	166	190	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk++ + + Lk+Hi++H XP_024988654.1 166 HICPypECGKRYAHEYKLKNHIMSH 190 679999******************6 PP
5	zf-C2H2	13.1	0.00028	237	262	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C k + + + L+ H+r+ H XP_024988654.1 237 YACPyeGCEKAYIHEYKLNLHLRReH 262 89*********************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MEHHSFHNPF ERRTFISSNT PAVKWFKEWV PQDVVATGGR CSVMRWITEA QLNAMKEKSK 60 EVEAIEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHAHI HGERQYVCHY ENCGKKFLDS 120 SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PECGKRYAHE 180 YKLKNHIMSH HEKQNNNNMM VEAPLKYVHI QPIEKPPPKA PKASTATYAS ASSDRPYACP 240 YEGCEKAYIH EYKLNLHLRR EHPGHFPEEN PKNAHGNNEM DVGSDHDGNT MKREITKSQK 300 QNRPKPNVKL PPAKVVQRKV STAVGNVIKK QLWPVVKDVY EEEDSEETEE DRDNVEDRWG 360 YGDNNNDEDD DEETEYED

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MEHHSFHNPF ERRTFISSNT PAVKWFKEWV PQDVVATGGR CSVMRWITEA QLNAMKEKSK  60
EVEAIEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHAHI HGERQYVCHY ENCGKKFLDS  120
SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PECGKRYAHE  180
YKLKNHIMSH HEKQNNNNMM VEAPLKYVHI QPIEKPPPKA PKASTATYAS ASSDRPYACP  240
YEGCEKAYIH EYKLNLHLRR EHPGHFPEEN PKNAHGNNEM DVGSDHDGNT MKREITKSQK  300
QNRPKPNVKL PPAKVVQRKV STAVGNVIKK QLWPVVKDVY EEEDSEETEE DRDNVEDRWG  360
YGDNNNDEDD DEETEYED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-127	C2H2 family protein