PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988656.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 377aa MW: 43673.7 Da PI: 6.5755

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988656.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	79	101	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H XP_024988656.1 79 CSyeGCGKTFIDAGALRKHAHIH 101 77779**************9877 PP
2	zf-C2H2	15.9	3.7e-05	106	130	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ +Cgk F ++s LkrH H XP_024988656.1 106 YVCHyeNCGKKFLDSSKLKRHFLIH 130 9********************8877 PP
3	zf-C2H2	21.7	5.4e-07	136	160	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nL++H++tH XP_024988656.1 136 FVCPheGCGKAFSLDFNLRSHMKTH 160 89**********************9 PP
4	zf-C2H2	15.8	4e-05	166	190	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk++ + + Lk+Hi++H XP_024988656.1 166 HICPypECGKRYAHEYKLKNHIMSH 190 679999******************6 PP
5	zf-C2H2	13.2	0.00028	236	261	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C k + + + L+ H+r+ H XP_024988656.1 236 YACPyeGCEKAYIHEYKLNLHLRReH 261 89*********************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MEHHSFHNPF ERRTFISSNT PAVKWFKEWV PQDVVATGGR CSVMRWITEA QLNAMKEKSK 60 EVEAIEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHAHI HGERQYVCHY ENCGKKFLDS 120 SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PECGKRYAHE 180 YKLKNHIMSH HEKNNNNMMV EAPLKYVHIQ PIEKPPPKAP KASTATYASA SSDRPYACPY 240 EGCEKAYIHE YKLNLHLRRE HPGHFPEENP KNAHGNNEMD VGSDHDGNTM KREITKSQKQ 300 NRPKPNVKLP PAKVVQRKVS TAVGNVIKKQ LWPVVKDVYE EEDSEETEED RDNVEDRWGY 360 GDNNNDEDDD EETEYED

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MEHHSFHNPF ERRTFISSNT PAVKWFKEWV PQDVVATGGR CSVMRWITEA QLNAMKEKSK  60
EVEAIEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHAHI HGERQYVCHY ENCGKKFLDS  120
SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PECGKRYAHE  180
YKLKNHIMSH HEKNNNNMMV EAPLKYVHIQ PIEKPPPKAP KASTATYASA SSDRPYACPY  240
EGCEKAYIHE YKLNLHLRRE HPGHFPEENP KNAHGNNEMD VGSDHDGNTM KREITKSQKQ  300
NRPKPNVKLP PAKVVQRKVS TAVGNVIKKQ LWPVVKDVYE EEDSEETEED RDNVEDRWGY  360
GDNNNDEDDD EETEYED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-128	C2H2 family protein