PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988657.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 376aa MW: 43235.2 Da PI: 6.545

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988657.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	77	99	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H XP_024988657.1 77 CSyeGCGKTFIDAGALRKHAHIH 99 77779**************9877 PP
2	zf-C2H2	15.9	3.7e-05	104	128	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ +Cgk F ++s LkrH H XP_024988657.1 104 YVCHyeNCGKKFLDSSKLKRHFLIH 128 9********************8877 PP
3	zf-C2H2	21.7	5.4e-07	134	158	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nL++H++tH XP_024988657.1 134 FVCPheGCGKAFSLDFNLRSHMKTH 158 89**********************9 PP
4	zf-C2H2	15.8	4e-05	164	188	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk++ + + Lk+Hi++H XP_024988657.1 164 HICPypECGKRYAHEYKLKNHIMSH 188 679999******************6 PP
5	zf-C2H2	13.2	0.00028	235	260	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C k + + + L+ H+r+ H XP_024988657.1 235 YACPyeGCEKAYIHEYKLNLHLRReH 260 89*********************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MAPSSCAKVK DWTSFNGAYN NQPMYLRVPQ DVVATGGRCS VMRWITEAQL NAMKEKSKEV 60 EAIEPEPEPT TEVLFLCSYE GCGKTFIDAG ALRKHAHIHG ERQYVCHYEN CGKKFLDSSK 120 LKRHFLIHTG ERDFVCPHEG CGKAFSLDFN LRSHMKTHSQ ENYHICPYPE CGKRYAHEYK 180 LKNHIMSHHE KQNNNNMMVE APLKYVHIQP IEKPPPKAPK ASTATYASAS SDRPYACPYE 240 GCEKAYIHEY KLNLHLRREH PGHFPEENPK NAHGNNEMDV GSDHDGNTMK REITKSQKQN 300 RPKPNVKLPP AKVVQRKVST AVGNVIKKQL WPVVKDVYEE EDSEETEEDR DNVEDRWGYG 360 DNNNDEDDDE ETEYED

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MAPSSCAKVK DWTSFNGAYN NQPMYLRVPQ DVVATGGRCS VMRWITEAQL NAMKEKSKEV  60
EAIEPEPEPT TEVLFLCSYE GCGKTFIDAG ALRKHAHIHG ERQYVCHYEN CGKKFLDSSK  120
LKRHFLIHTG ERDFVCPHEG CGKAFSLDFN LRSHMKTHSQ ENYHICPYPE CGKRYAHEYK  180
LKNHIMSHHE KQNNNNMMVE APLKYVHIQP IEKPPPKAPK ASTATYASAS SDRPYACPYE  240
GCEKAYIHEY KLNLHLRREH PGHFPEENPK NAHGNNEMDV GSDHDGNTMK REITKSQKQN  300
RPKPNVKLPP AKVVQRKVST AVGNVIKKQL WPVVKDVYEE EDSEETEEDR DNVEDRWGYG  360
DNNNDEDDDE ETEYED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-113	C2H2 family protein