PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988658.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 329aa MW: 37834.1 Da PI: 6.059

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988658.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	79	101	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H XP_024988658.1 79 CSyeGCGKTFIDAGALRKHAHIH 101 77779**************9877 PP
2	zf-C2H2	16.1	3.1e-05	106	130	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ +Cgk F ++s LkrH H XP_024988658.1 106 YVCHyeNCGKKFLDSSKLKRHFLIH 130 9********************8877 PP
3	zf-C2H2	13.4	0.00023	188	213	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C k + + + L+ H+r+ H XP_024988658.1 188 YACPyeGCEKAYIHEYKLNLHLRReH 213 89**********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MEHHSFHNPF ERRTFISSNT PAVKWFKEWV PQDVVATGGR CSVMRWITEA QLNAMKEKSK 60 EVEAIEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHAHI HGERQYVCHY ENCGKKFLDS 120 SKLKRHFLIH TGERDFVCPH EGCGKNNNNM MVEAPLKYVH IQPIEKPPPK APKASTATYA 180 SASSDRPYAC PYEGCEKAYI HEYKLNLHLR REHPGHFPEE NPKNAHGNNE MDVGSDHDGN 240 TMKREITKSQ KQNRPKPNVK LPPAKVVQRK VSTAVGNVIK KQLWPVVKDV YEEEDSEETE 300 EDRDNVEDRW GYGDNNNDED DDEETEYED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	3e-85	C2H2 family protein