PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988659.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 319aa MW: 36853.9 Da PI: 6.6547

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988659.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00077	24	42	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 Cgk+F + L++H H XP_024988659.1 24 GCGKTFIDAGALRKHAHIH 42 7**************9877 PP
2	zf-C2H2	16.2	3e-05	47	71	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ +Cgk F ++s LkrH H XP_024988659.1 47 YVCHyeNCGKKFLDSSKLKRHFLIH 71 9********************8877 PP
3	zf-C2H2	22	4.4e-07	77	101	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nL++H++tH XP_024988659.1 77 FVCPheGCGKAFSLDFNLRSHMKTH 101 89**********************9 PP
4	zf-C2H2	16.1	3.2e-05	107	131	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk++ + + Lk+Hi++H XP_024988659.1 107 HICPypECGKRYAHEYKLKNHIMSH 131 679999******************6 PP
5	zf-C2H2	13.4	0.00022	178	203	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C k + + + L+ H+r+ H XP_024988659.1 178 YACPyeGCEKAYIHEYKLNLHLRReH 203 89**********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MGATGCCGNR WQVLCYEVDH SYEGCGKTFI DAGALRKHAH IHGERQYVCH YENCGKKFLD 60 SSKLKRHFLI HTGERDFVCP HEGCGKAFSL DFNLRSHMKT HSQENYHICP YPECGKRYAH 120 EYKLKNHIMS HHEKQNNNNM MVEAPLKYVH IQPIEKPPPK APKASTATYA SASSDRPYAC 180 PYEGCEKAYI HEYKLNLHLR REHPGHFPEE NPKNAHGNNE MDVGSDHDGN TMKREITKSQ 240 KQNRPKPNVK LPPAKVVQRK VSTAVGNVIK KQLWPVVKDV YEEEDSEETE EDRDNVEDRW 300 GYGDNNNDED DDEETEYED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	5e-97	C2H2 family protein