PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988665.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 353aa    MW: 39149.8 Da    PI: 4.4591
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988665.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.7e-19122170254
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                     +y+GVr++k +g+W+AeIrd +     + +r++lg++ taeeA +a++  ++++e
  XP_024988665.1 122 KYRGVRQRK-WGKWAAEIRDpF-----KgRRVWLGTYNTAEEASRAYEIKKLEFE 170
                     8*******9.**********55.....45*******************9999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MPDGRKQLPV NRENLCNKKP KRRGKVIEQI DPMRTIRIIC HDPDLTDSSD DDDEPTGKPY  60
GRKAIVREIK IPVVGADCVA EEKTLGTEDS CQDSNHGEKN LVKRKRVLTK SPSQPQLSSG  120
LKYRGVRQRK WGKWAAEIRD PFKGRRVWLG TYNTAEEASR AYEIKKLEFE TMAGALKSCS  180
NNLKIQNNNK DNNSSSLVIV SDHEKQAVSE ESVGVIAHTS PSSVLEMESS SITKIFISDD  240
KKMDACASVI DEDSIDLLPN VGFGELDDEA LTLAEIGNDL DLGLDVGAPF LDDFVAPLEG  300
FGNLDDFQLC GFDDKDAGEL PDWDFGELNN EELAWINTLK MDEPAELCSL SSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.14e-26ERF family protein