PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988680.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 165aa    MW: 19223.6 Da    PI: 9.7326
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988680.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.4e-181569357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                    ++ ++t+eq++ Le+ F+ n++++ +++ +LA++lg++ rq+ +W+qN+Ra++++
  XP_024988680.1 15 NKKRLTNEQVKLLETSFNFNNKLDSTRKSQLAQELGVPARQIAIWYQNKRARWRN 69
                    66789************************************************95 PP
2HD-ZIP_I/II101.95.6e-3315106293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +k+rl++eqvklLE+sF+ ++kL+++rK++la+eLg+ +rq+a+W+qn+RAR++++ lE+++++L++++++++++++rLe+eve+L++el++
  XP_024988680.1  15 NKKRLTNEQVKLLETSFNFNNKLDSTRKSQLAQELGVPARQIAIWYQNKRARWRNQSLETEHKVLQHRLERVSSDKNRLEREVERLKTELAK 106
                     79*************************************************************************************99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    
MEQFPAPKKH PQKTNKKRLT NEQVKLLETS FNFNNKLDST RKSQLAQELG VPARQIAIWY  60
QNKRARWRNQ SLETEHKVLQ HRLERVSSDK NRLEREVERL KTELAKAKDL LVSSKTMNYA  120
SLPSFSSSCD EVGSSSLLGD HGDFYVCFDD HQFDHKSDGH DFFAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1818KKHPQKTNKKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.14e-31HD-ZIP family protein