PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988737.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 250aa    MW: 29061.9 Da    PI: 4.7858
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988737.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.6e-151057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEde+l+ +++++G  +W+  +r  g+ R++k+c++rw +yl
   XP_024988737.1 10 KGSWSLEEDEKLISYINRYGIWNWSQMPRFAGLSRSGKSCRLRWMNYL 57
                     799*****************99************************97 PP
2Myb_DNA-binding54.13.7e-1763108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eEd+++++ + +lG++ W++Ia++++ gRt++++k++w+++l
   XP_024988737.1  63 RGNFTKEEDDIILHSHSLLGNR-WSAIASRLP-GRTDNDVKNYWHTHL 108
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MTTPTTALKK GSWSLEEDEK LISYINRYGI WNWSQMPRFA GLSRSGKSCR LRWMNYLKPN  60
VKRGNFTKEE DDIILHSHSL LGNRWSAIAS RLPGRTDNDV KNYWHTHLKK RATEYNLVSE  120
TTEQNDMQSS PTFEAENMEI LQQPDNHMHE FFESCFTSED DSSSSCCTTT SKDHDDEFRA  180
NYFHTGSPGT VDDLQCFWDQ LCPVENLELG NNLYRNMFSD PIFQDSCNDP ISSTYSFYNN  240
DYNTSFLPNP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.14e-51MYB family protein