PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988774.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 248aa    MW: 28678.2 Da    PI: 6.7384
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988774.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.8e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W  eEd++l+ +++++G  +W+  ++  g+ R++k+c++rw +yl
   XP_024988774.1 14 KGAWDLEEDQKLISYINRYGIWNWSHMPKFAGLSRSGKSCRLRWMNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding44.92.6e-1467112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g++++eE+  ++  +  lG++ W++Ia++++ gR+++++k++w+++l
   XP_024988774.1  67 KGSFSKEEERSILLFHSILGNR-WSAIASRLP-GRSDNEIKNYWHTHL 112
                      799*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MRTPNGEIKV GLKKGAWDLE EDQKLISYIN RYGIWNWSHM PKFAGLSRSG KSCRLRWMNY  60
LKPDLKKGSF SKEEERSILL FHSILGNRWS AIASRLPGRS DNEIKNYWHT HLKKLLPNNP  120
MPKKPTQNDM NVSSCFEAHN VEKIQEHVNH VNDIPNPLFS WTSEDDNSSS NSVPTPKGYG  180
VEFIADHHDV SSPGTIEDLQ CFWRQLCPFE NLELGNIHQD MFSDNVYNDV IGPYSFHIDD  240
YDTNPSRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.14e-50MYB family protein