PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988849.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 186aa    MW: 21405.2 Da    PI: 6.2504
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988849.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-111162255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r+    +E++RR +++  +++L +l+P++   + +  s  + L++A +YIk+Lq
  XP_024988849.1 11 RVDRRTIEKNRRIHMKALYSQLHSLVPHD--SSREEISLPDQLQEAANYIKKLQ 62
                    566678**********************7..15566*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MECNRSSSSS RVDRRTIEKN RRIHMKALYS QLHSLVPHDS SREEISLPDQ LQEAANYIKK  60
LQIKLEKMNE EKDNLMGIKK LESIRDEKEI KSSNLSVGQQ RTPQIDVREI GSSLEAILIT  120
GVDFKFLFTE TIRVIHEEGF NVVNASFSIL NDTVFHTIHA QIGESYDQEN GVSRIIDRLN  180
CLVYDI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-42bHLH family protein