PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988907.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 464aa MW: 51573.9 Da PI: 8.7512

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988907.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4.1e-05	64	84	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H XP_024988907.1 64 CEICGKGFQRDQNLQLHRRGH 84 *******************88 PP
2	zf-C2H2	11.9	0.00069	138	160	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_024988907.1 138 WKCAKCSKCYAVQSDWKAHSKTC 160 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MLEKLIAEEA ITPNGFTHIN SLPPPSSNPP TIKKKRNLPG TPDPEAEVIA LSPKTLMATN 60 RFLCEICGKG FQRDQNLQLH RRGHNLPWKL KQRTTKEVRK RVYVCPEKSC VHNHPSRALG 120 DLTGIKKHFC RKHGEKKWKC AKCSKCYAVQ SDWKAHSKTC GTREYKCDCG TIFSRRDSFI 180 THRAFCDALA EETARVTAAS HFNNVTPAAV GNVNYHFVGP PVLAGPTMAQ HFSSIFKPIS 240 ANRPENHLDS TRQGALSLWT STDNNNDNND HDNLQDMHQL DPVLYADPHQ NHPPPSHYQS 300 NWGVFGVKTT SDHEVNVSAP SLFSTQNESH QTHPTSSMSA TALLQKAAQM GSTSSATTNH 360 SSFLGSFGLK ANSNITTATA TLVQNENKFC GLYGANPMMN GVLGNDLENE FSSLEQLQMY 420 PPSKRRHIQI DQEHHSGNNG GQTRDFLGVG IQPICHPRMR FDHV

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MLEKLIAEEA ITPNGFTHIN SLPPPSSNPP TIKKKRNLPG TPDPEAEVIA LSPKTLMATN  60
RFLCEICGKG FQRDQNLQLH RRGHNLPWKL KQRTTKEVRK RVYVCPEKSC VHNHPSRALG  120
DLTGIKKHFC RKHGEKKWKC AKCSKCYAVQ SDWKAHSKTC GTREYKCDCG TIFSRRDSFI  180
THRAFCDALA EETARVTAAS HFNNVTPAAV GNVNYHFVGP PVLAGPTMAQ HFSSIFKPIS  240
ANRPENHLDS TRQGALSLWT STDNNNDNND HDNLQDMHQL DPVLYADPHQ NHPPPSHYQS  300
NWGVFGVKTT SDHEVNVSAP SLFSTQNESH QTHPTSSMSA TALLQKAAQM GSTSSATTNH  360
SSFLGSFGLK ANSNITTATA TLVQNENKFC GLYGANPMMN GVLGNDLENE FSSLEQLQMY  420
PPSKRRHIQI DQEHHSGNNG GQTRDFLGVG IQPICHPRMR FDHV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-147	C2H2 family protein