PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024989068.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 318aa    MW: 33911.8 Da    PI: 10.2828
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024989068.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.4e-14106150347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
   XP_024989068.1 106 PWTEEEHRLFLVGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 150
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MAIVPGKCSE AVAGGGGGGG AGGATFSSTM NNDGGITGKG IMLFGVRLME GGGGGGGSSF  60
RKSASMNNLA QFDEQPQDSN VDAVGYASDD VVHPSARSRE RKRGVPWTEE EHRLFLVGLQ  120
KVGKGDWRGI SRNFVKTRTP TQVASHAQKY FLRRTNHNRR RRRSSLFDIT TDTYMNSSMD  180
DDQKPRPPPP SLKHELEKYP ISSTFPAGRL QLSGNGDHNI PIESLTLGRK AAISKSSGNP  240
MPPIPPIPPS MKMAKLNLSA ADDHQPPLPL TLNLSTSTSS DQQSSSSSSS TARHTLTNFQ  300
EISGNFNSSN GDSIISVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.24e-66MYB_related family protein