PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989075.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bZIP

Protein Properties

Length: 390aa MW: 40878.2 Da PI: 9.3603

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989075.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	67.9	1.6e-21	254	316	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae eeL kv++L++eN +Lk+e+++l+ ++a+lk ++ XP_024989075.1 254 ERELKRERRKQSNRESARRSRLRKQAEAEELGGKVEALTSENLTLKSEINRLTVNSANLKLQN 316 89**********************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MGNSEEAKDF KHDETSSPSL QQTGHVYPDW AAMQAYYGPR MAVPPYFSSA VASGHAPPPY 60 MWGPLQHMMP PYAAIYPHGG VYAHPGVTVA ASPMHIDSPA KSSGNSDRGL VKKLKGFDGL 120 AMSIGNDNGG SAEGGNDNGI SQSGETEGSS EGSDGNTTEG AKNGRKRSRG GSSTSSEVGK 180 TEQSDQLPST NANGGSKKVT GLAVAPGKVL GKTIGVVISA DSGTELELKK SPAAANMTSA 240 AVTMIPSTAI LQNERELKRE RRKQSNRESA RRSRLRKQAE AEELGGKVEA LTSENLTLKS 300 EINRLTVNSA NLKLQNAKLL EKLKNTQHEE AREDPRPDKK GSSLSTANLL SRVDNGSGSV 360 VRNDGEATGS GATLRQLLDG NPRADAVAAG

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MGNSEEAKDF KHDETSSPSL QQTGHVYPDW AAMQAYYGPR MAVPPYFSSA VASGHAPPPY  60
MWGPLQHMMP PYAAIYPHGG VYAHPGVTVA ASPMHIDSPA KSSGNSDRGL VKKLKGFDGL  120
AMSIGNDNGG SAEGGNDNGI SQSGETEGSS EGSDGNTTEG AKNGRKRSRG GSSTSSEVGK  180
TEQSDQLPST NANGGSKKVT GLAVAPGKVL GKTIGVVISA DSGTELELKK SPAAANMTSA  240
AVTMIPSTAI LQNERELKRE RRKQSNRESA RRSRLRKQAE AEELGGKVEA LTSENLTLKS  300
EINRLTVNSA NLKLQNAKLL EKLKNTQHEE AREDPRPDKK GSSLSTANLL SRVDNGSGSV  360
VRNDGEATGS GATLRQLLDG NPRADAVAAG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	170	GRKRSRG
2	271	277	RRSRLRK
3	271	278	RRSRLRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46270.1	4e-94	bZIP family protein