PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024989117.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family TCP
Protein Properties Length: 394aa    MW: 44405.9 Da    PI: 7.1996
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024989117.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP145.53.9e-45942452134
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssasec..eaes 77 
                     agkkdrhskihT++g+RdRR+Rls+++a++fF Lqd+LGfdk+sktieWL+ ++k+ai e t+                  + s+ s+c  ++++
  XP_024989117.1  94 AGKKDRHSKIHTAQGLRDRRMRLSLHIARKFFGLQDMLGFDKASKTIEWLFCKSKKAIEEVTEGvksqntnqsvsrenierCESPLSDCevDSGM 188
                     89**************************************************************8887776666555555544444788555555 PP

             TCP  78 ssssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                     + ++as+++++ + +++ k + +++++++   la+esr karararertre+m+i++
  XP_024989117.1 189 EFNAASSKGKQLKLQDEIKDSGNSRKPTESDLLARESRDKARARARERTRERMMINQ 245
                     55555555555777777799999999999999999*******************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    
MDYAYPSSNN ETMLVSSNRE SNRENLDTNH EEEGPLFGQF PSPFLDDIST TAILQNHHPH  60
HLNTDGWKTA TGSPTNKPPT SPSKTKRVRK KRSAGKKDRH SKIHTAQGLR DRRMRLSLHI  120
ARKFFGLQDM LGFDKASKTI EWLFCKSKKA IEEVTEGVKS QNTNQSVSRE NIERCESPLS  180
DCEVDSGMEF NAASSKGKQL KLQDEIKDSG NSRKPTESDL LARESRDKAR ARARERTRER  240
MMINQLEKSK QVFGANPNDD FEQLQLGFSA NPNNHYIEES SSSPLEYPGR HHFFEQTQLD  300
NIGQKTEDYL GTTAASSSSY FSAYGYNKNF ANPPAGWLNS SNTFLGFLGG WDSETFAENY  360
GLLPPSTGDL HGNLSSVVIP PSNFLHFETQ NQRD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230240RARARERTRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.16e-28TCP family protein