PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024989139.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 88aa    MW: 9966.24 Da    PI: 8.5174
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024989139.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.11.1e-0621552054
                    HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     ++L++llP++ + +s K s + +L+++++Y++sL
  XP_024989139.1 21 VSKLQQLLPELRNRRSNKASASKVLQETCNYVRSL 55
                    589*******8789999999999**********99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    
MSSRRSGSTP RITDEQIIEL VSKLQQLLPE LRNRRSNKAS ASKVLQETCN YVRSLHKEVD  60
DLSDRLSQLL STIDDDSPQA SIIRSLIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-28bHLH family protein