PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989162.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WOX

Protein Properties

Length: 411aa MW: 45231.6 Da PI: 8.7299

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989162.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.3	2.3e-17	57	117	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ XP_024989162.1 57 KPRWNPKPEQIRILESIFNSgMVNPPRDEIRKIRARLqeygQVGDANVFYWFQNRKSRSKH 117 89***************99***********************************995 PP
2	Wus_type_Homeobox	111.8	3.7e-36	56	118	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k XP_024989162.1 56 PKPRWNPKPEQIRILESIFNSGMVNPPRDEIRKIRARLQEYGQVGDANVFYWFQNRKSRSKHK 118 689**********************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MASSNRHWPS MFKSKPTYNT HQGHQWQSQG SNHPLASASH RSAPYASGCD ERTPEPKPRW 60 NPKPEQIRIL ESIFNSGMVN PPRDEIRKIR ARLQEYGQVG DANVFYWFQN RKSRSKHKNR 120 HLQKSQNNQT QPGVTKAATT SSSSSSEKSS SKSIEFLLNS PTASVNQQPQ AYIGSHHHHH 180 GGFFQEPLFF PVMQQPPPTP TTTSFTQEFC FPNLSTMINQ ENHHGTDDPT VVSSSGMLLT 240 DLMISQQYGI PTKNSKSKDV GDENIMKMLS HGTTPPPAAP TSIIPPATTI IAPSTITDIQ 300 GVEEVGTGKT IVFINDVPFE VAIGPFNVKE AFGDDAVLVD SSGQTVVTNE WGLTLQSLQH 360 GGFYYLVRSM TYDHAGTMDL ALSPVKANIY QKGVGSKVKT LYNGTLACGF S

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MASSNRHWPS MFKSKPTYNT HQGHQWQSQG SNHPLASASH RSAPYASGCD ERTPEPKPRW  60
NPKPEQIRIL ESIFNSGMVN PPRDEIRKIR ARLQEYGQVG DANVFYWFQN RKSRSKHKNR  120
HLQKSQNNQT QPGVTKAATT SSSSSSEKSS SKSIEFLLNS PTASVNQQPQ AYIGSHHHHH  180
GGFFQEPLFF PVMQQPPPTP TTTSFTQEFC FPNLSTMINQ ENHHGTDDPT VVSSSGMLLT  240
DLMISQQYGI PTKNSKSKDV GDENIMKMLS HGTTPPPAAP TSIIPPATTI IAPSTITDIQ  300
GVEEVGTGKT IVFINDVPFE VAIGPFNVKE AFGDDAVLVD SSGQTVVTNE WGLTLQSLQH  360
GGFYYLVRSM TYDHAGTMDL ALSPVKANIY QKGVGSKVKT LYNGTLACGF S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	4e-62	WOX family protein