PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024989163.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 253aa    MW: 29551.9 Da    PI: 5.985
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024989163.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.9e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd+ l+ ++ ++G  +W+  +r  g+ R++k+c++rw +yl
   XP_024989163.1 14 KGSWSREEDQMLISYISRYGIWNWSQMPRFAGLSRSGKSCRLRWMNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding47.83.3e-1567111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++eE++++ + + +lG++ W++Ia++++ gRt++++k++w+ +
   XP_024989163.1  67 RGNFSKEEEDIIFHSHLLLGNR-WAAIASRLP-GRTDNEIKNHWHAH 111
                      89********************.*********.***********976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MRTPTSDIKT GLKKGSWSRE EDQMLISYIS RYGIWNWSQM PRFAGLSRSG KSCRLRWMNY  60
LKPNIKRGNF SKEEEDIIFH SHLLLGNRWA AIASRLPGRT DNEIKNHWHA HLKKRLTDHN  120
MVPKTTNQND KRTSMTFKPD NVEEILQQPA NHNYDISESC LTFEDDIFSS SSSTTTSIEH  180
HQIDNRADYF DLGSPGTVDD LQYFWQQLCP FENLELENNH LDMLSNPIFQ DSFDDPNSPC  240
SFYISDYDII QGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-54MYB family protein